Miyagishima Initiative Research Unit

Publication


Publication (November 9. 2010)

(2010)
Miyagishima, S., and Kabeya, Y., (2010) Chloroplast division: squeezing the photosynthetic captive. Curr. Opin. Microbiol.

Minoda, A., Weber, A.P.M., Tanaka, K., and Miyagishima, S. (2010) Nucleus-independent control of the Rubisco operon by the plastid-encoded transcription factor Ycf30 in the red alga Cyanidioschyzon merolae. Plant Physiol., in press

Kabeya, Y., Nakanishi, H., Suzuki, K., Ichikawa, T., Kondou, Y., Matsui, M., and Miyagishima, S. (2010) The YlmG protein has a conserved function related to the distribution of nucleoids in chloroplasts and cyanobacteria. BMC Plant Biol., Apr 2;10:57

The International Aphid Genomics Consortium. (2010) Genome sequence of the pea aphid Acyrthosiphon pisum. PLoS Biol., 8(2):e1000313.

Nikoh N, McCutcheon JP, Kudo T, Miyagishima S, Moran NA, Nakabachi A. (2010) Bacterial genes in the aphid genome: Absence of functional gene transfer from Buchnera to its host. PLoS Genet., 6(2):e1000827.

Nakabachi A, Miyagishima S (2010) Expansion of genes encoding a novel type of dynamin in the genome of the pea aphid, Acyrthosiphon pisum. Insect Mol Biol., 19(s2):165-173.

Nakabachi A, Shigenobu S, Miyagishima S (2010) Chitinase-like proteins encoded in the genome of the pea aphid, Acyrthosiphon pisum. Insect Mol Biol., 19(s2):175-185.

Shigenobu S., Richards S., Cree A. G., Morioka M., Fukatsu T., Kudo T., Miyagishima S., Gibbs R.A., Stern D.L., Nakabachi A. (2010) A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum. Insect Mol. Biol., 19(s2):23-31.

Nakabachi A, Koshikawa S, Miura T, Miyagishima S. (2010) Genome size of Pachypsylla venusta (Hemiptera: Psyllidae), and the ploidy of its bacteriocyte, the symbiotic host cell that harbors intracellular mutualistic bacteria with the smallest cellular genome. Bull Entomol Res., 100(1):27-33.

Suzuki K. and Miyagishima S. (2010) Eukaryotic and Eubacterial Contributions to the Establishment of Plastid Proteome Estimated by Large-Scale Phylogenetic Analyses. Mol. Biol. Evol., 27(3):581-90.
#Co-first authors

Okazaki K., Kabeya Y., and Miyagishima S. (2010) The Evolution of the Regulatory Mechanism of Chloroplast Division. Plant Signal Behav., Vol. 5, 2.


(2009)

#Okazaki K., #Kabeya Y., Suzuki K., Mori T., Ichikawa T., Matsui M., Nakanishi H. and Miyagishima S. (2009) The PLASTID DIVISION1 and 2 components of the chloroplast division machinery determine the rate of chloroplast division in land plant cell differentiation. Plant Cell, 21(6):1769-80
#These authors contributed equally to this work

Glynn J.M., Yang Y., Vitha S., Schmitz A.J., Hemmes M., Miyagishima S., Osteryoung K.W. (2009) PARC6, a novel chloroplast division factor, influences FtsZ assembly and is required for recruitment of PDV1 during chloroplast division in Arabidopsis. Plant J., 59(5):700-11

Nakanishi H., Suzuki K., Kabeya Y., Okazaki K., and Miyagishima S. (2009). Conservation and differences of the Min system in the chloroplast and bacterial division site placement. Commun. Integr. Biol., 2:5, 1-3

Suzuki K., Nakanishi H., Bower J., Yoder DW., Osteryoung KW. and Miyagishima S. (2009) Plastid chaperonin proteins Cpn60alpha and Cpn60beta are required for plastid division in Arabidopsis thaliana. BMC Plant Biol., 2009, 9:37

Nikoh N, Nakabachi A. (2009) Aphids acquired symbiotic genes via lateral gene transfer. BMC Biol. Mar 10;7(1):12.

Nakabachi A., Koshikawa S., Miura T., Miyagishima S. (2009) Genome size of Pachypsylla venusta (Hemiptera: Psyllidae), and the ploidy of its bacteriocyte, the symbiotic host cell that harbors intracellular mutualistic bacteria with the smallest cellular genome. Bulletin of Entomological Research, 23:1-7

Nakanishi H., Suzuki K., Kabeya Y., Miyagishima S. (2009) Plant-Specific Protein MCD1 Determines the Site of Chloroplast Division in Concert with Bacteria-Derived MinD. Curr. Biol., 27;19(2):151-6

(2008)
Miyagishima S., Kuwayama H., Urushihara H., Nakanishi H. (2008) Evolutionary Linkage Between Eukaryotic Cytokinesis and Chloroplast Division by Dynamin Proteins. Proc. Natl. Acad. Sci. USA., 105, 15202-7

#Hirai M., #Arai M., #Mori T., Miyagishima S., Kawai S., Kita K., Kuroiwa T., Terenius O. and Matsuoka H.  (2008) Male fertility of malaria parasites is determined by GCS1, a plant-type reproduction factor. Curr Biol. 18, 607-613.
#These three authors contributed equally to this work.


(2007年)
Yoder D.W., Kadirjan-Kalbach D., Olson B.J.S.C., Miyagishima S., DeBlasio S.L., Hangarter R.P. and Osteryoung K.W. (2007) Effects Mutations in Arabidopsis FtsZ1 on Plastid Division, FtsZ Ring Formation and Positioning, and FtsZ Filament Morphology in vivo. Plant Cell Physiol. 48, 775-791

Glynn J.M., Miyagishima S., Yoder D.W., Osteryoung K.W. and Vitha S. (2007) Chloroplast Division. Traffic 8, 451-461

Maruyama S., Kuroiwa H., Miyagishima S., Tanaka K and Kuroiwa T. (2007) Centromere dynamics in the primitive red alga Cyanidioschyzon merolae. Plant J. 49, 1122-1129

Terasawa K., Odahara M., Kabeya Y., Kikugawa T., Sekine Y., Fujiwara M. and Sato N. (2007) The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants. Mol. Biol. Evol. 24, 699-709

(2006)

Miyagishima, S., Froehlich, J.E., and Osteryoung, K.W. (2006) PDV1 and PDV2 Mediate Recruitment of the Dynamin-Related Protein ARC5 to the Plastid Division Site. Plant Cell 18, 2517-2530.

Mori T., Kuroiwa H., Higashiyama T. and Kuroiwa T. (2006) GENERATIVE CELL SPECIFIC 1 is essential for angiosperm fertilization. Nat. Cell Biol. 8, 64-71

Nozaki H., Mori T., Misumi O., Matsunaga S. and Kuroiwa T. (2006) Males evolved from the dominant isogametic mating type. Curr Biol. 16, R1018-R1020

Higashiyama T., Inatsugi R., Sakamoto S., Sasaki N., Mori T., Kuroiwa H., Nakada T., Nozaki H., Kuroiwa T. and Nakano A. (2006) Species preferentiality of the pollen tube attractant derived from the synergid cell of Torenia fournieri. Plant Physiol. 142, 481-491

Okazaki, K., Sato, N., Tsuji, N., Tsuzuki, M. and Nishida, I. (2006) The significance of C16 fatty acids in the sn-2 positions of glycerolipids in the photosynthetic growth of Synechocystis sp. PCC6803. Plant Physiol. 141. 546-556.


(2005)
Miyagishima, S. (2005). Origin and evolution of the chloroplast division machinery. J. Plant Res. 118, 295-306.

Miyagishima, S., Wolk, C.P., Osteryoung, K.W. (2005). Identification of cyanobacterial cell division genes by comparative and mutational analyses. Mol. Microbiol. 56, 126-143.

Misumi, O., Matsuzaki, M., Nozaki, H., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Yoshida, Y., Kuroiwa, H., and Kuroiwa, T. (2005) Cyanidioschyzon merolae genome. A tool for facilitating comparable studies on organelle biogenesis in photosynthetic eukaryotes. Plant Physiol. 137, 567-585.

Nakanishi, H., Nozue, H., Suzuki, K., Kaneko, Y., Taguchi, G. and Hayashida, N. (2005) Characterization of the Arabidopsis thaliana mutant pcb2 which accumulates divinyl chlorophylls. Plant Cell Physiol. 46, 467-473.


(2004)
Miyagishima, S., Nozaki, H., Nishida, K., Nishida, K., Matsuzaki, M., and Kuroiwa, T. (2004) Two types of FtsZs for mitochondria and red-lineage chloroplasts: the duplication of FtsZ is implicated in endosymbiosis. J. Mol. Evol. 58, 291-303.

Matsuzaki, M., Misumi, O., Shin-I, T., Maruyama, S., Takahara, M., Miyagishima, S., Mori, T., Nishida, K., Yagisawa, F., Nishida, K., Yoshida, Y., Nishimura, Y., Nakao, S., Kobayashi, T., Momoyama, Y., Higashiyama, T., Minoda, A., Sano, M., Nomoto, H., Oishi, K., Hayashi, H., Ohta, F., Nishizaka, S., Haga, S., Miura, S., Morishita, T., Kabeya, Y., Terasawa, K., Suzuki, Y., Ishii, Y., Asakawa, S., Takano, H., Ohta, N., Kuroiwa, H., Tanaka, K., Shimizu, N., Sugano, S., Sato, N., Nozaki, H., Ogasawara, N., Kohara, Y. and Kuroiwa, T. (2004) Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Nature 428, 653-657.

Nakanishi, H., Suzuki, K., Jouke, T., Kodaira, R., Taguchi, G., Okazaki, M. and Hayashida, N. (2004) Collection and analysis of Arabidopsis color mutants. Endocytobiosis and Cell Res. 15, 328-338.


(2003)
Miyagishima, S., Nishida, K., and Kuroiwa, T (2003). An evolutionary puzzle: chloroplast and mitochondrial division rings. Trends Plant Sci. 8, 432-438.

Miyagishima, S., Nishida, K., Mori, T., Matsuzaki, M., Higashiyama, T., Kuroiwa H., and Kuroiwa, T. (2003). A plant-specific dynamin-related protein forms a ring at the chloroplast division site. Plant Cell 15, 655-665.

Ohta, N., Matsuzaki, M., Misumi, O., Miyagishima, S., Nozaki, H., Tanaka, K., Shin-I, T., Kohara, Y., and Kuroiwa, T. (2003). Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae. DNA Res. 10, 67-77.

Momoyama, Y., Miyazawa, Y., Miyagishima, S., Mori, T., Misumi, O., Kuroiwa, H., and Kuroiwa, T. (2003). The preomorphic division of plastids by FtsZ in tobacco Bright Yellow-2. Eur. J. Cell Biol. 82, 323-332.

Nishida, K., Takahara, M., Miyagishima, S., Kuroiwa, H., Matsuzaki, M., Kuroiwa, T. (2003). Dynamic recruitment of dynamin for final mitochondrial severance in a primitive red alga. Proc. Natl. Acad. Sci. USA 100, 2146-2151.

Mori T., Kuroiwa H., Higashiyama T. and Kuroiwa T. (2003) Identification of higher plant GlsA, a putative morphogenesis factor of gametic cells. Biochem. Biophs. Res. Commun. 306, 564-569

Yagisawa F., Mori T., Higashiyama T., Kuroiwa H. and Kuroiwa T. (2003) Regulation of Brassica rapa chloroplast proliferation in vivo and in cultured leaf disks. Protoplasma 222, 139-148.


(2002)
Kobayashi, T., Takahara, M., Miyagishima, S., Ohta, N., Sasaki, N., Kuroiwa, H., and Kuroiwa, T. (2002). Detection and localization of a chloroplast-encoded HU-like protein that organizes chloroplast nucleoids. Plant Cell 14, 1579-1589.

Kuroiwa, H., Mori, T., Takahara, M., Miyagishima, S., and Kuroiwa, T. (2002). Chloroplast division machinery as revealed by immunofluorescence and electron microscopy. Planta 215, 185-190.


(2001)
Miyagishima, S., Takahara, M., Mori, T., Kuroiwa H., Higashiyama, T., and Kuroiwa, T. (2001). Plastid division is driven by a complex mechanism that involves differential transition of the bacterial and eukaryotic division rings. Plant Cell 13, 2257-2268.

Miyagishima, S., Takahara, M., and Kuroiwa, T. (2001). Novel filaments 5 nm in diameter constitute the cytosolic ring of the plastid division apparatus. Plant Cell 13, 707-721.

Miyagishima, S., Kuroiwa, H., and Kuroiwa, T. (2001). The timing and manner of disassembly of the apparatuses for chloroplast and mitochondrial division in the red alga Cyanidioschyzon merolae. Planta 212, 517-528.

Higashiyama, T., Yabe, S., Sasaki, N., Nishimura, Y., Miyagishima, S., Kuroiwa, H., and Kuroiwa, T. (2001). Pollen tube attraction by the synergid cell. Science 293, 1389-1544.

Takahara, M., Kuroiwa, H., Miyagishima, S., Mori, T., and Kuroiwa, T. (2001). Localization of the mitochondrial FtsZ protein in a dividing mitochondrion. Cytologia 66, 421-425.

Mori, T., Kuroiwa, H., Takahara, M., Miyagishima, S., and Kuroiwa, T. (2001). Visualization of an FtsZ ring in chloroplasts of Lilium longiflorum leaves. Plant Cell Physiol. 42, 555-559.


(2000)
Takahara, M., Takahashi, H., Matsunaga, S., Miyagishima, S., Sakai, A., Kawano, S., and Kuroiwa, T. (2000). A putative mitochondrial ftsZ gene is encoded in the unicellular primitive red alga Cyanidioschyzon merolae. Mol. Gen. Genet. 264, 452-460.


(1999)
Miyagishima, S., Itoh, R., Toda, K., Kuroiwa, H., and Kuroiwa, T. (1999). Real-time analyses of chloroplast and mitochondrial division and differences in the behavior of their dividing rings during contraction. Planta 207, 343-353.

Miyagishima, S., Itoh, R., Toda, K., Kuroiwa, H., Nishimura, M., and Kuroiwa, T. (1999). Microbody proliferation and segregation cycle in the single-microbody alga Cyanidioschyzon merolae. Planta 208, 326-336.

Miyagishima, S., Itoh, R., Aita, S., Kuroiwa, H., and Kuroiwa, T. (1999). Isolation of dividing chloroplasts with intact plastid-dividing rings from a synchronous culture of the unicellular red alga Cyanidioschyzon merolae. Planta 209, 371-375.

Miyazawa, Y., Sakai, A., Miyagishima, S., Takano, H., Kawano, S., and Kuroiwa, T. (1999). Auxin and cytokinin have opposite effects on amyloplast development and the expression of starch synthesis genes in cultured bright yellow-2 tobacco cells. Plant Physiol. 121, 461-469.

Kuroiwa, T., Takahara, M., Miyagishima, S., Ohashi, Y., Kawamura, F., and Kuroiwa, H. (1999). The FtsZ protein is not located on outer plastid dividing rings. Cytologia 64, 333-342.

Itoh, R., Takano, H., Ohta, N., Miyagishima, S., Kuroiwa, H., and Kuroiwa T. (1999). Two ftsH-family genes encoded in the nuclear and chloroplast genomes of the primitive red alga Cyanidioschyzon merolae. Plant Mol. Biol. 41, 321-337.


(1998)
Miyagishima, S., Itoh, R., Toda, K., Takahashi, H., Kuroiwa, H., and Kuroiwa, T. (1998). Orderly formation of the double ring structures for plastid and mitochondrial division in the unicellular red alga Cyanidioschyzon merolae. Planta 206, 551-560.

Miyagishima S., Itoh, R., Toda, K., Takahashi, H., Kuroiwa, H., and Kuroiwa, T. (1998). Visualization of the microbody division in Cyanidioschyzon merolae with the fluorochrome brilliant sulfoflavin. Protoplasma 201, 115-119.

Miyagishima, S., Itoh, R., Toda, K., Takahashi, H., Kuroiwa, H., and Kuroiwa, T. (1998). Identification of a triple ring structure involved in plastid division in the primitive red alga Cyanidioschyzon merolae. J. Electron Microsc. 47, 269-272.

Toda, K., Takano, H., Miyagishima, S., Kuroiwa, H., and Kuroiwa, T. (1998). Characterization of a chloroplast isoform of serine acetyltransferase from the thermo-acidiphilic red alga Cyanidioschyzon merolae. Biochim. Biophys. Acta. 1403, 72-84.


(1997)
Takahashi, H., Kuroiwa, H., Miyagishima, S., Toda, K., Itoh, R., and Kuroiwa, T. (1997). Improved procedure for immunogold electron microscopy: rapid-freeze substitution with absolute acetone. Cytologia 62, 303-308.